Information for 3-CAKAATCTGCTCTCCM (Motif 4)

A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
Reverse Opposite:
A C T G A C T G A C T G C G T A C T A G C G T A A T C G A G T C T C G A C T A G C G T A A C G T G C A T G T C A C G A T A C T G
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.773
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.2 +/- 14.1bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC2/MA0891.1/Jaspar

Match Rank:1
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAKAATCTGCTCTCCM
CCTAATCCGC------
 A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAKAATCTGCTCTCCM
-CTAATCCTCTT----
 A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAKAATCTGCTCTCCM
NNNATTAATCCGNTTNA--
 A C G T A C G T A C G T A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAKAATCTGCTCTCCM
NNNATTAATCCGNTTNA--
 A C G T A C G T A C G T A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAKAATCTGCTCTCCM-
-------NSCACTYVAV
 A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAKAATCTGCTCTCCM
TGCTGASTCAGC------
 A C G T A C G T A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
A C G T A T C G T G A C G C A T C A T G C G T A T A G C G A C T G A T C C T G A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer

Match Rank:7
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------CAKAATCTGCTCTCCM
RAAWNTGCTGASTCAGCANW---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
C T G A C G T A C G T A C G T A G A T C C G A T T A C G G T A C G C A T C A T G C G T A A T G C G C A T G T A C C G T A C A T G A T G C G C T A C T G A G C A T A C G T A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAKAATCTGCTCTCCM
CNATAATCCGNTTNT--
 A C G T A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAKAATCTGCTCTCCM
GCTAATCCCC------
 A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CAKAATCTGCTCTCCM
-TTAATCCG-------
 A G T C G C T A A C G T C G T A G T C A A C G T A G T C A G C T C T A G A T G C C G A T A G T C A C G T T G A C G T A C G T A C
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T