Information for 2-TKTTWAKWSGKWGTYW (Motif 4)

A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
Reverse Opposite:
C G T A C T A G C G T A A G T C G C A T G T A C A G T C A T C G G C A T G T C A A C G T C G A T C G T A C G T A G T A C C G T A
p-value:1e-11
log p-value:-2.681e+01
Information Content per bp:1.783
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 24.5bp
Average Position of motif in Background33.9 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TKTTWAKWSGKWGTYW
NNAATTTTATTGGNTN---
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TKTTWAKWSGKWGTYW
NTTTTATTGG------
 A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TKTTWAKWSGKWGTYW
TTTTTATTGG------
 A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TKTTWAKWSGKWGTYW
-TTTTATKRGG-----
 A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TKTTWAKWSGKWGTYW
NTTTTATTGG------
 A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TKTTWAKWSGKWGTYW
GNNTTAATTGGTTGTT-
 A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TKTTWAKWSGKWGTYW
NNNTTAATTGGTTTTT-
 A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TKTTWAKWSGKWGTYW
NNANTTTTATTGGNNN---
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TKTTWAKWSGKWGTYW
-TTTTATTRGN-----
 A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TKTTWAKWSGKWGTYW
TATTGTTTATT--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G A T A T G C A C T G C A T G C G T A C T A G A C G T A G T C C G A T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T