Information for 4-ATAGCAAAGVAGCCAA (Motif 8)

C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
Reverse Opposite:
G C A T A C G T C T A G A T C G A G T C C G A T A C G T A G T C A C G T A C G T A G C T C A T G A G T C A G C T C T G A A G C T
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.780
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 21.9bp
Average Position of motif in Background65.5 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.58
Offset:8
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA-
--------CGTGCCAAG
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.58
Offset:10
Orientation:reverse strand
Alignment:ATAGCAAAGVAGCCAA
----------TGCCAA
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.55
Offset:8
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA--
--------GGTGCCAAGT
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA-
-ATGTACAGTAGCAAAG
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A A C G T
A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA
-------AGGTGTCA-
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA
------AAGGTGTKAA
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA
ACATCAAAGG------
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--ATAGCAAAGVAGCCAA
AAAGATCAAAGG------
 A C G T A C G T C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA
--NNVVCAGCTGBN--
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ATAGCAAAGVAGCCAA
----CGCAGCTGCG--
 C T G A A G C T C T G A C T A G G T A C C T G A T G C A C G T A A C T G T C G A C G T A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T