Information for 3-CGGCCTGCCCTYGGCT (Motif 4)

T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C G A T C C T A G C G T A A C T G A C T G A C T G A T G C C G T A A C T G A C T G G A T C A T G C A C T G
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.787
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 28.3bp
Average Position of motif in Background68.4 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
----CTGACCTTTG--
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
-----TGACCTYA---
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
---BNTGDCCTTG---
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
-----TGACCTTGAV-
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT----
-----TGWCCTCARNTGACC
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGGCCTGCCCTYGGCT
----NTGACCTTGA--
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
-----TGACCTTGAN-
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT---
-----TGACCTTTGCCCTA
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGGCCTGCCCTYGGCT
----GTGACCTT----
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CGGCCTGCCCTYGGCT
----CTGCCCGCA---
 T A G C T A C G C T A G A G T C A G T C A C G T A T C G T A G C A G T C A G T C A C G T A G T C C T A G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T