Information for 2-GTGSCTCCATGGCTTG (Motif 3)

A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
Reverse Opposite:
T G A C G T C A C T G A A C T G T A G C G T A C G T C A G A C T C T A G A C T G T C G A A C T G T A C G A G T C C G T A T A G C
p-value:1e-13
log p-value:-3.019e+01
Information Content per bp:1.669
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets43.5 +/- 26.7bp
Average Position of motif in Background46.0 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGSCTCCATGGCTTG
-NGTTGCCATGGCAA-
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGSCTCCATGGCTTG
-TGCCCNNAGGGCA--
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGSCTCCATGGCTTG
-TGCCCTNAGGGCA--
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGSCTCCATGGCTTG
-TGCCCTNAGGGCA--
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTGSCTCCATGGCTTG
--GTTGCCATGGCAAC
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GTGSCTCCATGGCTTG
--------TTGGCA--
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GTGSCTCCATGGCTTG
-------NTTGGCANN
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTGSCTCCATGGCTTG
--GGGGCCGAGGCCTG
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GTGSCTCCATGGCTTG
-GGTTGCCATGGCAA-
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GTGSCTCCATGGCTTG-
--GCACCCCTGGGTGCC
 A T C G G A C T T C A G A T G C G T A C A C G T G T A C G A T C C T G A C A G T A C T G A C T G G T A C G A C T C A G T A C T G A C G T
A C G T A C G T A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C