Information for 13-GCCGGCCTGTCRGAGC (Motif 24)

C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
Reverse Opposite:
A T C G G T A C A C G T A G T C G A T C T A C G G T C A A T G C G T C A A C T G A C T G G A T C G A T C C T A G A T C G G A T C
p-value:1e-9
log p-value:-2.098e+01
Information Content per bp:1.691
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif199.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets54.3 +/- 23.5bp
Average Position of motif in Background47.6 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:10
Orientation:reverse strand
Alignment:GCCGGCCTGTCRGAGC
----------CGGAGC
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCCGGCCTGTCRGAGC
-----GCTGTG-----
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GCCGGCCTGTCRGAGC
GTCATGCHTGRCTGS--
 A C G T C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:GCCGGCCTGTCRGAGC
-----GCTGTCAA---
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.48
Offset:12
Orientation:forward strand
Alignment:GCCGGCCTGTCRGAGC-
------------CAGCC
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.47
Offset:5
Orientation:forward strand
Alignment:GCCGGCCTGTCRGAGC-
-----GRTGMTRGAGCC
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.46
Offset:6
Orientation:reverse strand
Alignment:GCCGGCCTGTCRGAGC
------NTGTCAN---
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.45
Offset:0
Orientation:reverse strand
Alignment:GCCGGCCTGTCRGAGC
CNAGGCCT--------
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.45
Offset:2
Orientation:forward strand
Alignment:GCCGGCCTGTCRGAGC
--AGGCCTAG------
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.44
Offset:0
Orientation:forward strand
Alignment:GCCGGCCTGTCRGAGC----
SMCAGTCWGAKGGAGGAGGC
 C A T G A T G C G A T C C T A G C A T G A G T C G T A C A C G T A T C G A C G T A T G C C T A G A C T G G T C A A C T G T A G C A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C