Information for 9-CTTKTCTGCCACM (Motif 23)

A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
Reverse Opposite:
A C G T A C T G A C G T A C T G C T A G G T A C C G T A T A C G T G C A G T A C C T G A T C G A A C T G
p-value:1e-9
log p-value:-2.108e+01
Information Content per bp:1.758
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif114.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets52.1 +/- 28.4bp
Average Position of motif in Background47.1 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CTTKTCTGCCACM-
--TGTCTGDCACCT
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTTKTCTGCCACM-
-CTGTCTGTCACCT
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CTTKTCTGCCACM-
-----ATGCCAACC
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTTKTCTGCCACM
-----TTGCCAAG
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTTKTCTGCCACM-
----GGTGCCAAGT
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CTTKTCTGCCACM
------TGCCAA-
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTTKTCTGCCACM
----CGTGCCAAG
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTKTCTGCCACM
---VGCTGWCAVB
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTTKTCTGCCACM-----
--ACTATGCCAACCTACC
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTKTCTGCCACM
-TWGTCTGV----
 A G T C A G C T G A C T A C T G A C G T A T G C A C G T A C T G A G T C A G T C G T C A G T A C G T C A
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T