Information for 1-TCCYTGGCTTTAA (Motif 3)

A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
Reverse Opposite:
C G A T C G A T C G T A C G T A C G T A A C T G T G A C A G T C C G T A C T G A A C T G A C T G C G T A
p-value:1e-11
log p-value:-2.716e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.5 +/- 23.6bp
Average Position of motif in Background75.4 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA
---TTGACTTTT-
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCCYTGGCTTTAA
---TTGGCA----
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA
--NTTGGCANN--
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA
TGATTGGCTANN-
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA-
--------TTTAAT
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TCCYTGGCTTTAA
NNACTTGCCTT---
 A C G T A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA-----
----TNCCTTTGATCTTN
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA---
------CCTTTGATGT
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA-----
--------TTTAATTGCN
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCCYTGGCTTTAA----
--GCTGACCTTGAACTN
 A C G T A G T C A G T C A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T