Information for 4-GRRGGTTTTV (Motif 17)

T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C
Reverse Opposite:
A T C G C T G A T G C A C T G A G T C A A G T C A G T C G A T C A G C T A G T C
p-value:1e-7
log p-value:-1.836e+01
Information Content per bp:1.538
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif62.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets51.8 +/- 30.8bp
Average Position of motif in Background41.9 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GRRGGTTTTV
-NGGGATTA-
 T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GRRGGTTTTV-
-GGGGATTTCC
 T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GRRGGTTTTV----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PB0201.1_Zfp281_2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GRRGGTTTTV-
NNNATTGGGGGTNTCCT
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GRRGGTTTTV-
-VRGGATTARN
 T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GRRGGTTTTV----
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GRRGGTTTTV----
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GRRGGTTTTV-
-GGGAATTTCC
 T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GRRGGTTTTV-
NGGGGATTTCCC
 A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GRRGGTTTTV-----
AGGGGGATTAGCTGCC
 A C G T T C A G T C G A C T A G T C A G T C A G C A G T G A C T A C G T G A C T T A G C A C G T A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C