Information for 6-GMAACTCRAGTTT (Motif 5)

T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
Reverse Opposite:
C T G A C G T A C G T A A G T C A C G T A G C T A C T G C G T A C T A G A C G T A C G T A C G T A G T C
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.794
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif23.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.3 +/- 25.7bp
Average Position of motif in Background53.5 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GMAACTCRAGTTT
AGAAACGAAAGT--
 A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GMAACTCRAGTTT
GWAAYHTGAKMC-
 T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GMAACTCRAGTTT
CGTATCGAAACCAAA----
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GMAACTCRAGTTT
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GMAACTCRAGTTT
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GMAACTCRAGTTT
GAAACTGAAACT-
 T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GMAACTCRAGTTT
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GMAACTCRAGTTT
AGCCACTCAAG---
 A C G T T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GMAACTCRAGTTT
GAAAGTGAAAGT-
 T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GMAACTCRAGTTT
------CAAGCTT
 T A C G G T C A C G T A C G T A A G T C G A C T G T A C T C G A C G T A C T A G C G A T A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T