Information for 4-CAGAGGGCAGCAG (Motif 2)

A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
Reverse Opposite:
A G T C C A G T C A T G A T G C C G A T A C T G A T G C G A T C G T A C A C G T A T G C G A C T C T A G
p-value:1e-22
log p-value:-5.173e+01
Information Content per bp:1.740
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif178.0
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets47.6 +/- 25.1bp
Average Position of motif in Background48.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCAGCAG
CAAAGGTCAG---
 A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGAGGGCAGCAG-
---AGGGTAACAGC
 A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G A C G T
A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCAGCAG
CAAAGGTCAAGGG
 A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCAGCAG--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCAGCAG
AACAGATGGC-----
 A C G T A C G T A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGAGGGCAGCAG
-TNNGGGCAG---
 A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGGGCAGCAG
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGGCAGCAG
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGAGGGCAGCAG----
-----AGCAGCTGCTNN
 A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGGCAGCAG
TAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G T G C A C A T G C T A G A T C G T G A C C G T A A T C G G T A C G C T A T A C G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T