Information for 5-ATCGTGTCTC (Motif 14)

C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
Reverse Opposite:
A T C G C G T A A C T G C T G A A G T C C G T A A T G C A C T G C G T A C G A T
p-value:1e-9
log p-value:-2.216e+01
Information Content per bp:1.868
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.6 +/- 19.6bp
Average Position of motif in Background36.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATCGTGTCTC
TNTTATCTTATCTT
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATCGTGTCTC-
---CTGTCTGG
 C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATCGTGTCTC------
NNTNNTGTCTGGNNTNG
 A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PH0044.1_Homez/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----ATCGTGTCTC--
AAAACATCGTTTTTAAG
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATCGTGTCTC-
-VBSYGTCTGG
 C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATCGTGTCTC
--CCTGTCAA
 C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ATCGTGTCTC-
---TWGTCTGV
 C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ATCGTGTCTC
GKMTCADRTTWC
 A C G T A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATCGTGTCTC
ACTTTCGTTTCT-
 A C G T A C G T A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ATCGTGTCTC
ACTTCCTGTT--
 A C G T A C G T C G T A A C G T A G T C A T C G C G A T A C T G A G C T A G T C C G A T A T G C
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T