Information for 3-CCCACCAGGACAC (Motif 10)

A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
Reverse Opposite:
A T C G A C G T A T C G A C G T A G T C A G T C A C G T A C T G A C T G A C G T A C T G T A C G A C T G
p-value:1e-9
log p-value:-2.237e+01
Information Content per bp:1.919
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 19.1bp
Average Position of motif in Background19.3 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGACAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGACAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGACAC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCACCAGGACAC-
DCHCAGCAGGRGGCC
 A C G T A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCCACCAGGACAC
CACAGCAGGGGG-
 A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCCACCAGGACAC
---ANCAGGATGT
 A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCCACCAGGACAC-
----CAAGGHCANV
 A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCACCAGGACAC
CCTCACCTG-----
 A C G T A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCCACCAGGACAC
----TRAGGTCA-
 A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCCACCAGGACAC
-----AAGGTCAC
 A G T C A T G C G T A C C G T A A G T C A G T C C G T A A C T G A C T G C G T A A T G C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C