Information for 4-GGTGGCAAGG (Motif 30)

A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C T G A G T C A G T C C G T A A G T C A G T C
p-value:1e-7
log p-value:-1.715e+01
Information Content per bp:1.530
Number of Target Sequences with motif170.0
Percentage of Target Sequences with motif25.88%
Number of Background Sequences with motif8479.1
Percentage of Background Sequences with motif17.41%
Average Position of motif in Targets51.5 +/- 27.5bp
Average Position of motif in Background49.6 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTGGCAAGG
-TTGCCAAG-
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAAGG
GGTTGGCAT--
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAAGG-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAAGG
AGGTGTCA---
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGTGGCAAGG
GGTGCCAAGT
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGTGGCAAGG--
-AAGGCAAGTGT
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAAGG
NTTGGCANN-
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGTGGCAAGG---
NNCGTTGCTATGGNN
 A C G T A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGTGGCAAGG-----
-----CAAGGHCANV
 A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAAGG-
CTGTTGCTAGGS
 A C G T A C T G A C T G A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G