Information for 5-CHCDGTHBAATBCHCA (Motif 6)

A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
Reverse Opposite:
C G A T A T C G C G T A A C T G T A C G C G T A A C G T A C G T T C G A C A T G G T C A G T A C G C T A C T A G C A G T A C T G
p-value:1e-7
log p-value:-1.721e+01
Information Content per bp:1.611
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif513.5
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets58.0 +/- 20.4bp
Average Position of motif in Background49.8 +/- 41.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CHCDGTHBAATBCHCA
-----TCCAATCCACA
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CHCDGTHBAATBCHCA--
------SSAATCCACANN
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CHCDGTHBAATBCHCA---
---AGGCTAATCCCCAANG
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.45
Offset:5
Orientation:forward strand
Alignment:CHCDGTHBAATBCHCA
-----NYTAATCCYB-
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:5
Score:0.45
Offset:-2
Orientation:reverse strand
Alignment:--CHCDGTHBAATBCHCA-
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.45
Offset:6
Orientation:reverse strand
Alignment:CHCDGTHBAATBCHCA-
------CTAATCCTCTT
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.45
Offset:7
Orientation:forward strand
Alignment:CHCDGTHBAATBCHCA
-------TAATCCCN-
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.45
Offset:8
Orientation:forward strand
Alignment:CHCDGTHBAATBCHCA--
--------AAACCACANN
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.45
Offset:0
Orientation:forward strand
Alignment:CHCDGTHBAATBCHCA
CTTTGT----------
 A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-CHCDGTHBAATBCHCA
YCTTTGTTCC-------
 A C G T A G T C G C T A A G T C C A G T A C T G A C G T G A T C A C G T G T C A G T C A C G A T A G T C G T A C G A C T A T G C C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T