Information for 2-ACTAGTTTACAAT (Motif 2)

C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T C T A G A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G A C G T
p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.940
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 27.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACTAGTTTACAAT
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGTTTACAAT-
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACTAGTTTACAAT
-CBTGTTTAYAWW
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACTAGTTTACAAT
ACTAGTTAAC---
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGTTTACAAT--
NNNTTTGTTTACATTTN
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T A C G T A C G T
T G C A A G T C A T G C G C A T C G A T C G A T C T A G A G C T C G A T A C G T C G T A G A T C C G T A G C A T C G A T G C A T G C T A

FOXG1/MA0613.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACTAGTTTACAAT
--TTGTTTAC---
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
A C G T A C G T C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGTTTACAAT--
NNNTTTGTTTACATTTN
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T A C G T A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

PB0018.1_Foxk1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGTTTACAAT--
NNNTTTGTTTACATTTN
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T A C G T A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTAGTTTACAAT
NYYTGTTTACHN-
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
A G C T A G T C A G T C A C G T C T A G A C G T A C G T A C G T C G T A A G T C G A T C C G T A A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACTAGTTTACAAT
--TTGTTTAC---
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G C T
A C G T A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T A C G T