Information for 17-YCTTAAYRGRAGA (Motif 19)

A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G T C A G C T C T A G A C G T A C G T C G T A C G T A A C T G C T G A
p-value:1e-7
log p-value:-1.839e+01
Information Content per bp:1.868
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.3 +/- 27.7bp
Average Position of motif in Background61.3 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BSX/MA0876.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YCTTAAYRGRAGA
--NTAATTGG---
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YCTTAAYRGRAGA
--CTAATKGV---
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----YCTTAAYRGRAGA
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T A C G T A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

Nkx2-5/MA0063.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:YCTTAAYRGRAGA
--TTAATTG----
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T A C G T A C G T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----YCTTAAYRGRAGA
TGATTGTTAACAGTTGG
 A C G T A C G T A C G T A C G T A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:YCTTAAYRGRAGA-
CCTTAATNGNTTTT
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:YCTTAAYRGRAGA
-GCTAATTGCT--
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YCTTAAYRGRAGA
--TTAATTAN---
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YCTTAAYRGRAGA
--NTAATTGN---
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:YCTTAAYRGRAGA
-GKTAATGR----
 A G C T A G T C A C G T A C G T C G T A C G T A A G T C C T G A C T A G C T A G C G T A A C T G G T C A
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T