Information for 6-AGMCAAAGTCTTT (Motif 13)

C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
Reverse Opposite:
T C G A T C G A C T G A A T C G G C T A G A T C G C A T G A C T A C G T A C T G A C T G A T G C G A C T
p-value:1e-10
log p-value:-2.314e+01
Information Content per bp:1.601
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.7 +/- 21.2bp
Average Position of motif in Background55.4 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGMCAAAGTCTTT
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGMCAAAGTCTTT
GAAAGTGAAAGT----
 A C G T A C G T A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGMCAAAGTCTTT
--ACAAAG-----
 C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGMCAAAGTCTTT
AGAAAGTGAAAGTGA--
 A C G T A C G T A C G T A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGMCAAAGTCTTT
AAAACAAAGG----
 A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGMCAAAGTCTTT---
TATTCAAGGTCATGCGA
 A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGMCAAAGTCTTT
AAAACAATGG----
 A C G T C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGMCAAAGTCTTT
-RACAAWGG----
 C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGMCAAAGTCTTT-
--ACAAAGGNBCCT
 C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGMCAAAGTCTTT---
ATGGAAAGTCGTAAAA
 C G T A T A C G T G A C T G A C T C G A C G T A C G T A C T A G C G A T T A G C G A C T A G C T A G C T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A