Information for 2-AGTTTTGAAT (Motif 6)

C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T
Reverse Opposite:
G T C A A C G T C G A T G A T C C G T A C T G A G T C A C G T A A T G C G A C T
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.845
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif7.02%
Number of Background Sequences with motif621.7
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets51.3 +/- 26.2bp
Average Position of motif in Background51.4 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:AGTTTTGAAT-
--ATTTGAATT
 C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:AGTTTTGAAT---
---TTTGAAACCG
 C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTTGAAT-----
NNNTATTGAATTGNNN
 A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTTGAAT--
NNTNTCATGAATGT
 A C G T A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTTGAAT---
TNAGTTTCGATTTTN
 A C G T A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T A C G T
C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTTTTGAAT-
--ATTTGCATA
 C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

TBX21/MA0690.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTTTTGAAT
AAGGTGTGAA-
 A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGTTTTGAAT--
--ATTTGCATAA
 C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTTTTGAAT
TAGGTGTGAAG
 A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTTTTGAAT--
TTCATTTGCATAT
 A C G T C T G A A T C G C G A T A C G T A G C T C G A T C T A G C G T A C G T A C A G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T