Information for 20-TCGGCTTATG (Motif 43)

C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
Reverse Opposite:
A G T C G T C A A G C T C G T A C G T A T C A G A T G C G T A C T A C G C G T A
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.765
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif55.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets45.6 +/- 26.7bp
Average Position of motif in Background52.9 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX1/MA0711.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTATG
-CGGATTAN-
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCGGCTTATG---
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCGGCTTATG---
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTATG
-GGGATTANN
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCGGCTTATG
NGGGATTA--
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCGGCTTATG
--GGATTAGC
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCGGCTTATG
GNGGATTAGN
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTATG---
-DGWTTTATGRCN
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTATG
-NGGATTAA-
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCGGCTTATG
-NGGATTAN-
 C G A T A T G C A C T G A T C G A G T C A C G T G C A T C T G A A C G T A C T G
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T