Information for 19-TTTCTGGAGT (Motif 42)

A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C A G T C C G T A A C T G C G T A C G T A C G T A
p-value:1e-6
log p-value:-1.389e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.4 +/- 29.4bp
Average Position of motif in Background49.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTCTGGAGT
GGTCTGGCAT
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTTCTGGAGT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTGGAGT----
TTTCCTGGAAAGNNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

Bcl6/MA0463.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTTCTGGAGT---
TTTCCTAGAAAGCA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTTCTGGAGT---
---CTYRAGTGSY
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTGGAGT------
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTCTGGAGT
CTGTCTGG---
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTCTGGAGT
CTTCCNGGAA-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTTCTGGAGT---
---BTBRAGTGSN
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TTTCTGGAGT
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T