Information for 6-AGCACCCAAACACACT (Motif 15)

G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
Reverse Opposite:
C G T A C T A G C A G T A C T G A C G T A C T G A C G T G A C T C G A T A C T G A C T G A C T G A C G T A C T G A G T C C A G T
p-value:1e-10
log p-value:-2.389e+01
Information Content per bp:1.683
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif39.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.6 +/- 24.4bp
Average Position of motif in Background47.6 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL007.1_BREd/Jaspar

Match Rank:1
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:AGCACCCAAACACACT
--------NANANAC-
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGCACCCAAACACACT
CGAAGCACACAAAATA---
 A C G T A C G T A C G T G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGCACCCAAACACACT-
AACACCAAAACAAAGGA
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGCACCCAAACACACT
---AAACAAACATTC-
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCACCCAAACACACT
---AAATAAACA----
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGCACCCAAACACACT
--AAACCACAGAN---
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGCACCCAAACACACT
----GCCACRCCCACY
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:AGCACCCAAACACACT---
---------MRSCACTYAA
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:AGCACCCAAACACACT
-----CCAGACRSVB-
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGCACCCAAACACACT
ACTAGCCAATCA----
 G C T A T A C G T G A C G T C A T A G C T G A C G T A C C G T A C T G A C G T A T A G C G T C A G T A C G T C A A G T C C G A T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T