Information for 1-GGGNGGCCTGAGSTCA (Motif 1)

A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
Reverse Opposite:
A C G T A C T G C G T A A T G C A G T C A C G T A G T C C G T A A C T G A C T G G T A C A T G C C T G A A G T C A G T C A G T C
p-value:1e-12
log p-value:-2.907e+01
Information Content per bp:1.806
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 17.9bp
Average Position of motif in Background45.8 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
-AGGGGTCAGAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--GAGGTCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--------TRAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
-GGTCANYTGAGGWCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--GGGGTCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--TAGGGCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--GGGGTCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.57
Offset:8
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--------AGRGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--GGGGTCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGGNGGCCTGAGSTCA
--GAGGTCAAAGGTCA
 A C T G A C T G A C T G A G C T A T C G A C T G T A G C G T A C G C A T A C T G C G T A A C T G A T C G A C G T A G T C T G C A
A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A