Information for 5-CMCAGAATGMGAGCAA (Motif 8)

A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G T C A G C T A T G C A C G T T A G C C G T A A C G T A C G T A G T C C G A T A C T G A C G T C T A G
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.753
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 25.8bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.58
Offset:10
Orientation:forward strand
Alignment:CMCAGAATGMGAGCAA
----------CAGCC-
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CMCAGAATGMGAGCAA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CMCAGAATGMGAGCAA
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CMCAGAATGMGAGCAA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CMCAGAATGMGAGCAA
----GAGSCCGAGC--
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CMCAGAATGMGAGCAA
---TGAGTGACAGSC-
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CMCAGAATGMGAGCAA---
--GATATTGACAGCTGCGT
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A A C G T A C G T A C G T
A C G T A C G T C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CMCAGAATGMGAGCAA
--NTGATTGACAGN--
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CMCAGAATGMGAGCAA
--BTGABTGACAGS--
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CMCAGAATGMGAGCAA
----AAATCACAGCA-
 A G T C G T C A T G A C C G T A A C T G G T C A G T C A C G A T A T C G G T C A A T C G C T G A A C T G A G T C T C G A C T G A
A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T