Information for 3-AGTTCTCTGGCCCGCK (Motif 5)

G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
Reverse Opposite:
T G A C C T A G G A T C A C T G T C A G A T C G A T G C A T G C G T C A A C T G C T G A A T C G G T C A G T C A A G T C C A G T
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.707
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 27.2bp
Average Position of motif in Background42.0 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGTTCTCTGGCCCGCK
---TGTCTGDCACCT-
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
VBSYGTCTGG------
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
--CTGTCTGG------
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGTTCTCTGGCCCGCK
---GCTCGGSCTC---
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
---GGTCTGGCAT---
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCTCTGGCCCGCK
NAGGTCANTGACCT---
 A C G T G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
--TWGTCTGV------
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
--CTGTCTGTCACCT-
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:AGTTCTCTGGCCCGCK
--------GGCGCGCT
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGTTCTCTGGCCCGCK
AGGTCTCTAACC----
 G T C A A C T G A C G T A C G T A T G C A G C T A G T C A C G T A T C G A T C G A T G C A G T C T G A C C A T G A G T C A C T G
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T A C G T A C G T A C G T