Information for 10-TGACAAACAT (Motif 14)

A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
Reverse Opposite:
C G T A G A C T A C T G A C G T A C G T A C G T A T C G C G A T A G T C G T C A
p-value:1e-9
log p-value:-2.246e+01
Information Content per bp:1.848
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif66.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.8 +/- 18.3bp
Average Position of motif in Background47.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGACAAACAT
RHTGWCAR----
 A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGACAAACAT
TTGACAG----
 A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGACAAACAT
ARNTGACA-----
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGACAAACAT
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGACAAACAT
TTGACAGG---
 A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGACAAACAT-
GAATGACGAATAAC
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGACAAACAT
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGACAAACAT
VBTGWCAGCB--
 A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGACAAACAT
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGACAAACAT
TTGCCAAG---
 A C G T A C G T A C T G C G T A A T G C C G T A G T C A G T C A G T A C C T G A C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T