Information for 9-CACTCTGTAA (Motif 12)

A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A
Reverse Opposite:
C G A T A G C T G T C A A G T C G T C A C T A G C G T A A C T G C G A T A T C G
p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.841
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif78.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets46.1 +/- 28.1bp
Average Position of motif in Background48.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CACTCTGTAA
--CTTTGT--
 A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACTCTGTAA-----
AGGACGCTGTAAAGGGA
 A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CACTCTGTAA
MRSCACTYAA---
 A C G T A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACTCTGTAA-----
AAGACGCTGTAAAGCGA
 A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACTCTGTAA-----
AAGACGCTGTAAAGCGA
 A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACTCTGTAA---
GHTACAWTGTADCHR
 A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T A C G T A C G T
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CACTCTGTAA---
GHWACAWTGTWDCWA
 A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T A C G T A C G T
C T A G G C T A G C A T G C T A G A T C G C T A G C T A C G A T C T A G G C A T C G T A C G A T G A T C G C T A C G T A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACTCTGTAA
AGGVNCCTTTGT--
 A C G T A C G T A C G T A C G T A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACTCTGTAA-
---GCTGTCAA
 A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CACTCTGTAA
---GCTGTG-
 A T G C G C T A A G T C C G A T A G T C A C G T A C T G A C G T T C G A C G T A
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T