Information for 2-GGATTATGAG (Motif 8)

A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C G C T A A G C T C G T A G T C A A C G T A G T C A G T C
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.872
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif34.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets38.1 +/- 24.0bp
Average Position of motif in Background52.5 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGATTATGAG
GGGATTANN--
 A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GGATTATGAG
GNGGATTAGN--
 A C G T A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGATTATGAG
NGGATTAA---
 A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGATTATGAG
GGGATTAA---
 A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------GGATTATGAG
TTGCCCGGATTAGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GGATTATGAG
NNGGATTAGN--
 A C G T A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GGATTATGAG
CGGATTAN---
 A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GGATTATGAG
VRGGATTARN--
 A C G T A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGATTATGAG
RGGATTAR---
 A C G T A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGATTATGAG
GGATTAGC--
 A C T G A C T G C G T A A C G T C G A T C T G A C G A T A C T G C T G A A C T G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T