Information for 21-CGTTCGTCCATTTTGC (Motif 38)

A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
Reverse Opposite:
C T A G A G T C C G T A C G T A G T C A C G T A A C G T A C T G A C T G C T G A A G T C C T A G G T C A C G T A A G T C A C T G
p-value:1e-4
log p-value:-9.753e+00
Information Content per bp:1.917
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.7 +/- 33.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC
---GCNGCCATCTTG-
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC
---GCCGCCATCTTG-
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CGTTCGTCCATTTTGC---
--TGTTCCCATTGTGTACT
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SPIC/MA0687.1/Jaspar

Match Rank:4
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC
--TACTTCCTCTTTTN
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T C A G T C G T A A G T C A C G T C G A T G T A C T A G C A C G T A T G C C G A T C A G T C A G T G A C T C A G T

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC
--NNGCACCTTTCTCC
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.49
Offset:7
Orientation:forward strand
Alignment:CGTTCGTCCATTTTGC-
-------CCATTGTTYB
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CGTTCGTCCATTTTGC
------NCCATTGTTC
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC---
----NNNCCATTGTGTNAN
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:CGTTCGTCCATTTTGC
-------CCTTTGTT-
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.47
Offset:6
Orientation:reverse strand
Alignment:CGTTCGTCCATTTTGC
------NCCATTGTTY
 A G T C A C T G A C G T A C G T A G T C A C T G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T