Information for 7-CTGGCGACGGATT (Motif 12)

A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T
Reverse Opposite:
G T C A C G T A A C G T A G T C G A T C C T A G C G A T A G T C C T A G A T G C A G T C C G T A T A C G
p-value:1e-8
log p-value:-2.057e+01
Information Content per bp:1.699
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif17.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets62.0 +/- 25.4bp
Average Position of motif in Background39.3 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCGACGGATT
NNTTTANNCGACGNA--
 A C G T A C G T A C G T A C G T A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:2
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTGGCGACGGATT--
-------CGGATTAN
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTGGCGACGGATT
SCCTAGCAACAG---
 A C G T A C G T A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CTGGCGACGGATT--
-------NGGATTAA
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:CTGGCGACGGATT---
--------GGATTAGC
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCGACGGATT
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTGGCGACGGATT---
------NNGGATTAGN
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTGGCGACGGATT---
------GNGGATTAGN
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CTGGCGACGGATT---
-------GGGATTANN
 A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCGACGGATT
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A G T C A C G T T A C G A T C G A G T C C T A G C G T A A G T C C A T G A C T G T G C A C G A T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T