Information for 17-CCAAAAACGTTTGTCA (Motif 41)

A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
Reverse Opposite:
A C G T A C T G C T G A A G T C G C T A C T G A C G T A T A G C C A T G C G A T C G A T A C G T A G C T A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.822e+01
Information Content per bp:1.703
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif17.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.0 +/- 21.2bp
Average Position of motif in Background44.0 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCAAAAACGTTTGTCA
CAATTGCAAAAATAT------
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:CCAAAAACGTTTGTCA-
----------NTGTCAN
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CCAAAAACGTTTGTCA
AAGCCATAAAA--------
 A C G T A C G T A C G T A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:4
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CCAAAAACGTTTGTCA
--AGAAACGAAAGT--
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCAAAAACGTTTGTCA
TACTGGAAAAAAAA------
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CCAAAAACGTTTGTCA-
---TATAAGTAGGTCAA
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A A C G T
A C G T A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CCAAAAACGTTTGTCA
GTCATAAAAN-------
 A C G T A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCAAAAACGTTTGTCA
--AGGVNCCTTTGT--
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CCAAAAACGTTTGTCA----
----AAGCACCTGTCAATAT
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.48
Offset:9
Orientation:reverse strand
Alignment:CCAAAAACGTTTGTCA-
---------CCTGTCAA
 A G T C G T A C C G T A C T G A C G T A C G T A C G T A G T A C A T C G A C G T G A C T C A G T T A C G A G C T T G A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A