Information for 4-GGMTGSCACA (Motif 13)

T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A
Reverse Opposite:
G C A T A T C G C A G T T A C G T A G C G T A C C G T A C A G T A T G C A G T C
p-value:1e-10
log p-value:-2.315e+01
Information Content per bp:1.562
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif209.7
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets41.8 +/- 19.5bp
Average Position of motif in Background49.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGMTGSCACA--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGMTGSCACA-
-CCAGGAACAG
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGMTGSCACA
GGTTGGCAT-
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGMTGSCACA-
TGTCTGDCACCT
 A C G T T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGMTGSCACA
-CTTGGCAA-
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGMTGSCACA-
CTGTCTGTCACCT
 A C G T A C G T T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGMTGSCACA
VGCTGWCAVB
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGMTGSCACA--
GSCTGTCACTCA
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGMTGSCACA
ARNTGACA--
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGMTGSCACA--
GGATGACTCATC
 T C A G T A C G G T C A G C A T C A T G A T C G A T G C G T C A T A G C C G T A A C G T A C G T
C A T G C T A G T C G A A C G T A C T G C G T A T A G C C G A T T G A C C G T A A G C T G A T C