Information for 3-GTAATTAGCATGG (Motif 6)

A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
Reverse Opposite:
A G T C A T G C G T C A C A G T A C T G A T G C C G A T C G T A C T G A C G A T A G C T C G T A G T A C
p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.712
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.6 +/- 22.9bp
Average Position of motif in Background61.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EVX1/MA0887.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAGCATGG
GGTAATTAGC----
 A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C A C G T A C G T A C G T A C G T

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAGCATGG
GGTAATTAGC----
 A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:3
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATTAGCATGG
NTNAGGTAATTACCTT--
 A C G T A C G T A C G T A C G T A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTAATTAGCATGG
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

HOXA2/MA0900.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAGCATGG
CCTAATTACC----
 A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T A C G T A C G T A C G T

PH0052.1_Hoxa5/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GTAATTAGCATGG
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

PH0072.1_Hoxc8/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GTAATTAGCATGG
TTGGGGTAATTAACGT--
 A C G T A C G T A C G T A C G T A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T A C G T A C G T

EMX2/MA0886.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAGCATGG
GCTAATTAGC----
 A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T A C G T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTAATTAGCATGG
GCTAATTAAC----
 A C G T A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTAATTAGCATGG
BTVATTWGCATA-
 A C T G G A C T T C G A C G T A A G C T C G A T C G T A A T C G A G T C G C T A C A G T A T C G C T A G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T