Information for 13-TGCCAGTCTG (Motif 36)

A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A T C A G C T G A G T A C C G A T A C T G A C T G G T A C T C G A
p-value:1e-6
log p-value:-1.516e+01
Information Content per bp:1.839
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif198.6
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets47.5 +/- 27.3bp
Average Position of motif in Background49.1 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCCAGTCTG
TGCCAA----
 A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGCCAGTCTG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGTCTG
CGTGCCAAG---
 A C G T A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGTCTG
ATGCCAACC--
 A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGCCAGTCTG-
-VBSYGTCTGG
 A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGTCTG
ATGCCAGACN-
 A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGCCAGTCTG-
---CTGTCTGG
 A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGTCTG
TTGCCAAG---
 A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGTCTG
AGGTGHCAGACA-
 A C G T A C G T A C G T A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGCCAGTCTG-
---TWGTCTGV
 A G C T A C T G A G T C A G T C C G T A A C T G G A C T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G