Information for 12-GCTGCCAAAGTTT (Motif 26)

C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
Reverse Opposite:
C G T A C T G A C T G A A T G C A C G T A C G T A G C T A C T G A T C G A G T C C T G A A C T G A G T C
p-value:1e-8
log p-value:-2.045e+01
Information Content per bp:1.720
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif51.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.4 +/- 25.7bp
Average Position of motif in Background51.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAAAGTTT
--TGCCAA-----
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAAGTTT
CGTGCCAAG----
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTGCCAAAGTTT
GGTGCCAAGT---
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGCCAAAGTTT
-TTGCCAAG----
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTGCCAAAGTTT
-ATGCCAACC---
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGCCAAAGTTT
NNNCAGCTGTCAATATN-
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAAAGTTT-----
--TGCCAAAATAAACANN
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAAAGTTT
GCTGTCAA-----
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCTGCCAAAGTTT-
-------AAGCTTG
 C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

E2F8/MA0865.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCTGCCAAAGTTT
TTTCCCGCCAAA----
 A C G T A C G T A C G T C T A G G T A C A G C T T A C G A T G C A G T C C T G A T G C A C G T A A T C G G A C T G A C T C G A T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T A C G T A C G T