Information for 2-TGATTTATTWCAG (Motif 3)

A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
Reverse Opposite:
G T A C G C A T T A C G G C T A C G T A C T G A A C G T C G T A C G T A G T C A G C A T A G T C C G T A
p-value:1e-16
log p-value:-3.725e+01
Information Content per bp:1.737
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif166.1
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.6 +/- 25.9bp
Average Position of motif in Background50.0 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TGATTTATTWCAG
TGATTTATGGC--
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATTWCAG
NTGATTTATGGCC-
 A C G T A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TGATTTATTWCAG
TGATTGATGA---
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGATTTATTWCAG
TGATTTATGGCC-
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGATTTATTWCAG
TGATTTATGGCC-
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGATTTATTWCAG
TGATTRATGGCY-
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGATTTATTWCAG
TGAGTCATTTC--
 A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGATTTATTWCAG
TGTGACTCATT----
 A C G T A C G T A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATTWCAG
ATGATKGATGRC--
 A C G T A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGATTTATTWCAG
DATGASTCATNN---
 A C G T A C G T A C G T A C T G C G T A A C G T A C G T G A C T C G T A A G C T C G A T C G A T A T G C C G T A C A T G
C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C A C G T A C G T A C G T