Information for 10-CAGCAGGAGAGATCAC (Motif 19)

A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
Reverse Opposite:
A T C G C G A T T A C G G T C A C G A T A G T C A C G T A G T C A C G T A T G C A G T C A G C T T C A G A T G C C G A T A C T G
p-value:1e-11
log p-value:-2.566e+01
Information Content per bp:1.760
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 25.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGAGAGATCAC
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGAGAGATCAC
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGAGAGATCAC
CACAGCAGGGGG------
 A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGAGAGATCAC
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGAGAGATCAC
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CAGCAGGAGAGATCAC
---CAGGTGAGG----
 A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGAGAGATCAC
DCTCAGCAGG---------
 A C G T A C G T A C G T A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CAGCAGGAGAGATCAC---
---TCTCAAAGGTCACCTG
 A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGCAGGAGAGATCAC
GTAGGGCAAAGGTCA-
 A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CAGCAGGAGAGATCAC---
--GACAGAGATATCAGTGT
 A G T C G C T A T A C G A G T C C T G A A C T G A T C G C G T A C T A G C G T A A C T G G C T A A C G T A T G C C G T A A T G C A C G T A C G T A C G T
A C G T A C G T T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T