Information for 4-RWCAAACAAA (Motif 13)

T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A
Reverse Opposite:
C G A T A G C T C A G T T C A G A G C T A C G T C G A T C T A G G C A T A G C T
p-value:1e-12
log p-value:-2.921e+01
Information Content per bp:1.463
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif6.89%
Number of Background Sequences with motif954.8
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets47.6 +/- 27.1bp
Average Position of motif in Background50.8 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0016.1_Foxj1_1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--RWCAAACAAA----
AAAGTAAACAAAAATT
 A C G T A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

FOXP1/MA0481.1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----RWCAAACAAA-
CAAAAGTAAACAAAG
 A C G T A C G T A C G T A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

Foxj3/MA0851.1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----RWCAAACAAA---
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----RWCAAACAAA---
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-RWCAAACAAA
AAATAAACA--
 A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RWCAAACAAA
-GTAAACAAT
 T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A
A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

FOXP3/MA0850.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RWCAAACAAA
-GTAAACA--
 T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A
A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RWCAAACAAA-
AAACAAACATTC
 A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--RWCAAACAAA---
AAAAATAACAAACGG
 A C G T A C G T T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Foxj2/MA0614.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RWCAAACAAA
-GTAAACAA-
 T C G A C G T A G A T C G C T A T G C A T C G A A G T C G T C A T C G A G C T A
A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T