Information for 1-AGTCATAAAA (Motif 1)

G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A
Reverse Opposite:
G C A T C G A T C G A T C G A T C G T A G A C T A T C G C T G A A T G C A C G T
p-value:1e-18
log p-value:-4.354e+01
Information Content per bp:1.739
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.92%
Number of Background Sequences with motif479.8
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets51.0 +/- 27.1bp
Average Position of motif in Background51.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:AGTCATAAAA-
-GTCGTAAAAT
 G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AGTCATAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.84
Offset:1
Orientation:forward strand
Alignment:AGTCATAAAA-
-GTCATAAAAN
 G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---AGTCATAAAA---
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---AGTCATAAAA---
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGTCATAAAA
AAGCCATAAAA
 A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---AGTCATAAAA---
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGTCATAAAA-
AGTCGTAAAAA
 G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AGTCATAAAA-
GGTAATAAAAA
 G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---AGTCATAAAA----
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T G T C A A T C G G A C T A T G C C T G A A C G T G C T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T