Information for 3-CATCCAACACWGGCAC (Motif 4)

G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
Reverse Opposite:
A T C G A C G T A T C G A T G C G T A C C G T A A C T G A C G T A C T G C A G T A C G T A T C G A T C G C G T A G A C T A C T G
p-value:1e-14
log p-value:-3.260e+01
Information Content per bp:1.747
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.2 +/- 21.3bp
Average Position of motif in Background18.0 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
-----AACAAAGG---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
----GAACAATGGN--
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CATCCAACACWGGCAC---
---CAATCACTGGCAGAAT
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
---VRAACAATGG---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
-----RACAAWGG---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CATCCAACACWGGCAC
GYCATCMATCAT------
 A C G T A C G T G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
----GAACAATGG---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
---VRRACAAWGG---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CATCCAACACWGGCAC
---GGAACAAAGR---
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CATCCAACACWGGCAC-
-AATGAACAATGGAATT
 G T A C C T G A G C A T A T G C A T G C C G T A G T C A A G T C C G T A G T A C G C A T A C T G A T C G A T G C T C G A A T G C A C G T
A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T