Information for 8-TCCAATTAGMGCMTTC (Motif 14)

A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
Reverse Opposite:
C T A G C T G A C G T A C A G T A C T G A G T C C A G T T A G C A C G T C G T A C G T A A C G T C A G T A C T G C T A G C G T A
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.788
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.6 +/- 29.1bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
-CCAATTAA-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
-CCAATTAG-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
TCTAATTAAA------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
-CCAATTAA-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCCAATTAGMGCMTTC
GAAGACCAATTAGCGCT---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCCAATTAGMGCMTTC
---AATTAGTG-----
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
-GCAATTAG-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
-CCAATTAA-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCAATTAGMGCMTTC
GCCAATTAGC------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCAATTAGMGCMTTC
-BCMATTAG-------
 A C G T A G T C A G T C G C T A C G T A C G A T A C G T G T C A A C T G G T A C A C T G A G T C G T A C A C G T A G C T A G T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T