Information for 6-CGGGGAGGCTCCC (Motif 9)

A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C G T A A C T G A G T C A T G C A C G T A G T C A G T C A G T C A G T C C T A G
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.914
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.7 +/- 21.4bp
Average Position of motif in Background51.0 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:7
Orientation:forward strand
Alignment:CGGGGAGGCTCCC
-------GCTCCG
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGGGGAGGCTCCC
-GGGGATTCCCCC
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

MZF1/MA0056.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGGGGAGGCTCCC
TGGGGA-------
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGGGGAGGCTCCC-
--GGGAAATCCCCN
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGGGGAGGCTCCC--
NNNGGGGCGCCCCCNN
 A C G T A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGGGAGGCTCCC
TGGGGAAGGGCM-
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGGGAGGCTCCC
AGGGGATTCCCCT
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CGGGGAGGCTCCC
---GGAAATTCCC
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGGGGAGGCTCCC-
CTGGCAGNCTGCCA
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGGGGAGGCTCCC
---GGAAATTCCC
 A G T C T A C G A C T G A C T G A C T G C G T A A T C G A C T G A G T C A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C