p-value: | 1e-5 |
log p-value: | -1.255e+01 |
Information Content per bp: | 1.530 |
Number of Target Sequences with motif | 3.0 |
Percentage of Target Sequences with motif | 0.45% |
Number of Background Sequences with motif | 2.3 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 70.0 +/- 14.4bp |
Average Position of motif in Background | 37.5 +/- 24.7bp |
Strand Bias (log2 ratio + to - strand density) | 10.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer
Match Rank: | 1 |
Score: | 0.66 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | GCCTCTTGTT- -NCCATTGTTC |
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PB0183.1_Sry_2/Jaspar
Match Rank: | 2 |
Score: | 0.65 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -GCCTCTTGTT------ CNNNTATTGTTCNNNNN |
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PB0065.1_Sox15_1/Jaspar
Match Rank: | 3 |
Score: | 0.64 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --GCCTCTTGTT----- ANNTCTATTGTTCNNNA |
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SOX9/MA0077.1/Jaspar
Match Rank: | 4 |
Score: | 0.64 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCCTCTTGTT- --CCATTGTTC |
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Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer
Match Rank: | 5 |
Score: | 0.62 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCCTCTTGTT-- --CCATTGTTNY |
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PB0173.1_Sox21_2/Jaspar
Match Rank: | 6 |
Score: | 0.62 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GCCTCTTGTT------ AATCAATTGTTCCGCTA |
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PB0071.1_Sox4_1/Jaspar
Match Rank: | 7 |
Score: | 0.62 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --GCCTCTTGTT----- TNNTCCTTTGTTCTNNT |
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MF0011.1_HMG_class/Jaspar
Match Rank: | 8 |
Score: | 0.61 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | GCCTCTTGTT ----ATTGTT |
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PB0073.1_Sox7_1/Jaspar
Match Rank: | 9 |
Score: | 0.61 |
Offset: | -5 |
Orientation: | reverse strand |
Alignment: | -----GCCTCTTGTT------- TNNANNTCTATTGTTNTNNANN |
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Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer
Match Rank: | 10 |
Score: | 0.61 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCCTCTTGTT --CCWTTGTY |
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