Information for 9-GCTGTAAAAT (Motif 31)

A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C
p-value:1e-6
log p-value:-1.462e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.0 +/- 8.6bp
Average Position of motif in Background63.5 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAAAAT--
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAAAAT--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAAAAT--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTGTAAAAT-
NGYCATAAAWCH
 A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCTGTAAAAT
GCTGTCAA--
 A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTGTAAAAT
NGCAATTAAA-
 A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTGTAAAAT
--TGGAAAA-
 A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCTGTAAAAT---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTAAAAT-
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTGTAAAAT
GGTCGTAAAAA
 A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A C G T A C G T A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A