Information for 20-GCTGTTCACTGTGGCT (Motif 29)

A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
Reverse Opposite:
C T G A T A C G T A G C G A T C T G C A T A G C G C T A T A C G C A G T T A C G T G C A T G C A T A G C T G C A T A C G T A G C
p-value:1e-6
log p-value:-1.590e+01
Information Content per bp:1.474
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.6 +/- 24.6bp
Average Position of motif in Background30.7 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT
NNTGTTTATTTTGGCA
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT-
------GTCTGTGGTTT
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GCTGTTCACTGTGGCT--
--------CTGTGGTTTN
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCTGTTCACTGTGGCT--
------NNHTGTGGTTWN
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT-
-------GCTGTGGTTT
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GCTGTTCACTGTGGCT-
-------NNTGTGGTTT
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT
--TGTTTACTTAGG--
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
A C G T A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T A C G T

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT
-CTGTTTAC-------
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
A C G T A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT
GTAGGTCACTGGGTCA
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCTGTTCACTGTGGCT
---ATGCCCTGAGGC-
 A T C G A T G C A C G T A T C G A C G T A C G T A T G C G T C A A T G C C G A T A T C G A C G T C T A G A T C G A T G C A G C T
A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T