Information for 4-TTGGCTTWYAGCCAAA (Motif 7)

G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C T G A C T G A T G C G C A T C T A G C G A T C G T A C T G A A C T G G A T C G T A C C G T A C G T A
p-value:1e-12
log p-value:-2.869e+01
Information Content per bp:1.721
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets32.3 +/- 19.7bp
Average Position of motif in Background49.1 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TTGGCTTWYAGCCAAA
TTGGCANNNTGCCAAG
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTGGCTTWYAGCCAAA
TTGGCATGGTGCCA--
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA
CTGGCAGNCTGCCA--
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:9
Orientation:reverse strand
Alignment:TTGGCTTWYAGCCAAA
---------TGCCAA-
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:7
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA
-------CGTGCCAAG
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.65
Offset:7
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA-
-------GGTGCCAAGT
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.59
Offset:8
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA
--------TTGCCAAG
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA--
------ACTAGCCAATCA
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:TTGGCTTWYAGCCAAA---------
---------TGCCAAAATAAACANN
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.55
Offset:9
Orientation:forward strand
Alignment:TTGGCTTWYAGCCAAA---
---------AGCCAATCGG
 G A C T A C G T A C T G C A T G T G A C G A C T G C A T G C T A G A C T C G T A A T C G G T A C A G T C C G T A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G