Information for 15-CGGGCTTTTC (Motif 35)

A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A C G T A T G C A C T A G A G T C A G T C A G T C A C T G
p-value:1e-3
log p-value:-9.137e+00
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif28.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets36.9 +/- 27.0bp
Average Position of motif in Background54.3 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CGGGCTTTTC-
-GGGGATTTCC
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGGGCTTTTC
GGGGATTTCC
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGGGCTTTTC-
-GGGAATTTCC
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGGCTTTTC-
-GGGAATTTCC
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGGGCTTTTC-
NGGGGATTTCCC
 A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CGGGCTTTTC--
-----TTTTCCA
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGGGCTTTTC---
NNGCACCTTTCTCC
 A C G T A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGGGCTTTTC----
----ATTTTCCATT
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGGCTTTTC----
----ATTTTCCATT
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGGCTTTTC
NGGGATTA--
 A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T