Information for 17-CTTGGCAGCGGTTAAA (Motif 29)

G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T C G A T G T C A C G T A A G T C A G T C A T C G A G T C A C G T A C T G A G T C G T A C T G C A C G T A A C T G
p-value:1e-7
log p-value:-1.767e+01
Information Content per bp:1.767
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 29.3bp
Average Position of motif in Background52.3 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGCGGTTAAA
NNTTGGCANN-------
 A C G T G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGCGGTTAAA
CTTGGCAA--------
 G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGCGGTTAAA
NTTGGCANN-------
 G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGCGGTTAAA
-TTGGCA---------
 G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGCGGTTAAA
-TTGACAGC-------
 G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGCGGTTAAA
-TTGACAGG-------
 G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAGCGGTTAAA
WDNCTGGGCA---------
 A C G T A C G T A C G T G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCAGCGGTTAAA
NNATTGACAGGTGCTT--
 A C G T A C G T G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCAGCGGTTAAA
GTATTGACAGGTNNTT--
 A C G T A C G T G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCAGCGGTTAAA
NTATTGACAGGTNNTN--
 A C G T A C G T G T A C A C G T A C G T A C T G C T A G A G T C G T C A C T A G A T G C T C A G A C T G C G A T A C G T C G T A C G T A C T G A
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T A C G T A C G T