Information for 15-CCAGAACACAAAC (Motif 21)

A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
Reverse Opposite:
C T A G A C G T A C G T A C G T A C T G A C G T A T C G C G A T A C G T A G T C A C G T A C T G A C T G
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 27.2bp
Average Position of motif in Background77.4 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAGAACACAAAC--
CGAAGCACACAAAATA
 A C G T A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAACACAAAC
ATGCCAGACN------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CCAGAACACAAAC-
----AAAACAAAGG
 A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAGAACACAAAC----
-AAACAGACAAAGGAAT
 A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGAACACAAAC
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGAACACAAAC
CCAGGAACAG----
 A C G T A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGAACACAAAC
NNGATCTAGAACCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGAACACAAAC
-NWAACCACADNN
 A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCAGAACACAAAC-
--GAAAMTGAAACT
 A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C A C G T
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGAACACAAAC
-CGGAAGTGAAAC
 A G T C A G T C C G T A A C T G C G T A C G T A A T G C C G T A A G T C C G T A C G T A C G T A G A T C
A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C