Information for 2-ATGTCACGGATGA (Motif 4)

C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A
Reverse Opposite:
A C G T A G T C G T C A A C G T A G T C A G T C A C T G A C G T C T A G T C G A A G T C C G T A A C G T
p-value:1e-13
log p-value:-3.205e+01
Information Content per bp:1.856
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 19.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATGTCACGGATGA-----
-CGTCACGCATGACTGCA
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATGTCACGGATGA-----
-CGTCACGCATGACTGCA
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATGTCACGGATGA
-AGTCACGC----
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ATGTCACGGATGA-----
-TGAACCGGATTAATGAA
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ATGTCACGGATGA-----
-TGAACCGGATTAATGAA
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ATGTCACGGATGA------
--NNAAGGGATTAACGANT
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ATGTCACGGATGA-
------CGGATTAN
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATGTCACGGATGA--
-----GNGGATTAGN
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATGTCACGGATGA--
-----NNGGATTAGN
 C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ATGTCACGGATGA
ARNTGACA-------
 A C G T A C G T C G T A A C G T A C T G A C G T A G T C C G T A G T A C C T A G A C T G C G T A A C G T C T A G C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T